nfcore/ampliseq is a bioinformatics analysis pipeline used for 16S rRNA or ITS amplicon sequencing data (currently supported is Illumina paired end or PacBio). The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.
Access the tool at: https://nf-co.re/ampliseq/
Source code and documentation is available at: https://github.com/nf-core/ampliseq
Contact: Daniel Lundin, Linnaeus University