Menu Close


nfcore/ampliseq is a bioinformatics analysis pipeline used for 16S rRNA or ITS amplicon sequencing data (currently supported is Illumina paired end or PacBio). The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.

Access the tool at:

Source code and documentation is available at:

Contact: Daniel Lundin, Linnaeus University